Biology 1

Spring Semester

2008-2009

ANNOUNCEMENTS:

June 1st- Short Answer for Individual Portion of the test posted here

Partner assignments posted here.

Diagram Banks in color posted here.

GMO Results-

Please review the pictures that are attached here. Print the pictures and annotate the gel. Find your lanes and decide

1) did you get DNA?

2) did the PSII pcr work?

3) is the food GMO'ed?

4) what is the size of the fragment?

Suggestion: copy the picture into ppt and type text boxes over the lanes in white letters.

Section 1/2 results jpg

Section 3/4 results jpg

Section 5/6 results jpg

VI. & Cell Div  Ch.8

DNA packing and DNA Rplctn Anim.

Biology Project: DNA & Mitosis

WIkipedia: Mitosis

Cells Alive:Mitosis

Comparison of Mitosis and Meiosis

V. DNA Structure and Function

Silly Lab Tech!!

gel electrophoresis (utah)

gel electrophoresis (DNA LC)

Restriction Enzymes

Access Excellence Restriction Enzymes

Restriction Enzymes Animation (DNALC)

DNA Structure ppt

DNA structure hw doc

DNA replicatn vid

DNA Interactive

DNA Structure Review

Transcription Animation

Transciption Animation

Translation Animation

Eukaryotic mRNA splincing utube

Eukaryotic Expression

Eukarytotic transcription youtube

Alternative Splicing ppt.

Transformation

Genetic Code Table

 

IV- Photosynthesis

Photosynthesis Tutorial Project

PhotosynthesisTutorial Project II

JK's Photosynthesis Animation

Photosynthesis: the movie

Rubisco (MOM)

Photosynthesis Text and Diagrams (PH)

Light reaction(youtube)

Dark Reaction (youtube)

III-Cellular Respiration

Glycolysis Review Animation

Big Glycolysis Animation (detailed)

Glycolysis animation (bad one)

Glycolysis animation better one

Krebs Cycle Animation

Krebs II Animation

Animation on the ETC

Youtube animation ETC

More on ETC(yout tube)

ETC animation with book diagrams (youtube)

ATP Synthase animation

Respiration

Tutorial Practice Problems

Citric Acid Cycle Tutorial

Electron Transport Chain Tutorial

II-Cell Structure

Cell ppt

Part of a Cell ppt

Membrane Dynamics ppt

Osmosis Lab ppt

Cell Biology Animations

CellsAlive (how big it is!)

Harvard Cell Animation

 

I. Macromolecules & Biochemistry

Chapter 3 ppt.

BIochemistry Image Gallery

(scroll down to Biochem)

Protein Structure Tutorial

The Biology Project:

Biochemistry

The PDB

Protein Structure

(Biology Project)

Wikipedia: Proteins

Amino Acid List

Macromolecules Modeling

Project (under construction)

Forming a peptide bond animation

Bad protein structure animation

More protein amimation with examples

Animation on Protein Structure

Previous Tests

Essay test questions  

 

June 2009

Mon, June 1

Review Day

 

Group work during class on Exam Part I

Second part of exam handed out. Please work on the exam at least forty five minutes every night.

Tues, June 2

Exams

HW: Work on the exam at night for 45 minutes at night.

Wed, June 3

Exams

HW: Work on the exam for 45 minutes

Please review and bring your questions to your group exam tomorrow.

Thurs, June 4

Science Exam

You will take your exam in assigned groups in the science wing.

45 minutes for group work

Fill in scantron

30 individual work

Fri, June 5

6/7

Graduation MC

8 9 Faculty Meetings

10

8:30- 9:30 Faculty Office Hours- you can check your exam

11

End of Year Faculty meetings

12

End of Year Faculty  Meetings

13/14

May 2009

May 1

Transformation Results reviewed,

Be sure that you lab have the results  in your notebook

2/3

4 Plasmid Map

Finish the plasmid map

5  Silly Lab Tech assigned

Complete plasmid maps tonight bring to class tomorrow

Review electrophoresis concepts

6

Plasmid maps due for Silly Lab

7

Honors Bio/Chem Test -room to be determined/ period 7

Marine Biologist Dr. Krediet  is giving a talk!

1/2 room 110 8:15-8:59

3/4 marine biology lecture in McCrae 10:19-11:03

 

8

SIlly lab Tech due

5/6 Room 110 Marine Scientist Talk

12:15- 12:55

9/10

Concert DuBourg

 

Mother's Day

Test Chapter 10& 11 DNA Structure,

11 Test Chapter 10& 11 DNA Structure,

 

12

Harvest of Fear finishing....

LOOK for foods to bring tonight! See above for good choices.

 

13

FOOD for DNA Extraction!!!!!

 

 

 

14

DNA Extraction

Setting up PCR reactions

Complete the questions in the handout.

15

Setting up PCR reaction

Take home Molecular Biology essay questions

 

 

 

Faculty induction to the Magestri Reception

16/17

Alumni Reunion Weekend

18

Gel Electrophoresis of PCR products

Analysis of gel results

 

19

20

Cell Division and Mitosis

Review phase of Cell cycle in your notebook

21

Cell Division and Mitosis Continued

HW- Review the image of cellular division of mitosis  and identify as many phases as you can for homework

Analyse your gels- see links upper left

22

Microscope work on mitosis and gel analysis

23/24

Work on review of semester material....work on outlines of material within each unit.

25

Memorial Day

School Closed

 

27

Senior Day and Yearbook Dedication Day

28

Upper School Athletics

29

 Short Hills BBQ

30

Last Day of Classes

Review Day

31/1

 

April 2009

30

Photosynthesis Begins

Review notes carefuly

Read 108- 112

Review the structure of the cholorplast- where does the light reaction occur?

Dark reaction?

31

Special Schedule

Please work on labeling the thylakoid membrane diagram. Please take the time to annotate the diagram extensively and carefully!

Please read  7.8, 7.9  carefully.

View Photosynthesis: the movie!!! Watch it and supplement  your notes.

1

Article on Photosynthesis

 

2

Window Graffiti!

 

3

Wrapping up photosynthesis

Check point!

 

Grades close today.

Comments to be written over the weekend!

4/5

Comments writing

6

Quiz  on Photosynthesis and Cell Respiration- you may use your windows to help you!

7

Molecular Biology! New Section!

Review cytochrome C on PDB website- what does it do?

Read the following section in your text book and label the diagram on hw. Include 5' ends 3' ends, identify a nucleotide, base pair, purine, pryimidine, backbone, show anti parallel. Link on the left has hw page.

Read 10.2, 10.3

Check out DNAi website for interviews with james watson about Rosalind Franklin

8

Holocaust Assembly

Special Schedule

Yeast Lab

Which sugar does a yeast prefer? Sucrose? Maltose? Glucose? What does a yeast use sugar for?

Section 3/4 and 5/6 read 10.4 and 10.5

Review replication

What is a template strand? What is semiconservative?  What enzymes are associated with DNA replication? Continous and discontinous synthesis?

Section 1/2 graph your results and be ready to discuss

9 Yeast Lab

Honors Projects due!

10 Good Friday

No Classes

11/12

13

Ya better know 5' and 3' end by today!!!

DNA Replication

Read 10.4, 10. 5

DNA strands only grow in the direction of 5' to 3' or 3' to 5'?

Form III review meeting at 3 pm.

14

One gene--> one polypeptide theory.

How does the construction of hemoglobin confirm this idea?

transcription

translation

Read 10.6 and 10.7, 10.8 

Review links.

Dr. Stock visiting CP for SMART Team visit.

15

Special Schedule for  Ruby Bridges visit

Period 3 missing class!

Prokarotic Gene Hunting

16  Prokaryotic Gene Hunting

Eukaryotic Gene Expression

Introns and Exons

Can you compare a prokaryotic mRNA transcript to eukaryotic transcript? What are the differences?

Quiz on monday DNA Structure and basic gene expression

18/19

20

SMART Team Field Trip to New Orleans

www.pingrysmartteam.com

Substitute Instructions

Handout quiz

Collect!

Grade!

21

SMART Team Field Trip

to New Orleans

Movie: The Secret of Photo 51

 22

Earth Day!

23 24 Faculty Inservice Day 25/26

27

Swine Flu!!!

Section 1/2- bring Eurkaryotic Gene hw to class tomorrow

Section 3/4- finished gene hunting ex. woth 2 points bing gene hunting page with you tomorrow and quiz to go over tomorrow

Section 5/6- we finished gene hunting and you should bring hw from gene hunting and  quiz tomorrow

28

29

Transformation Lab!

We will check the results on Friday!

Make sure that you have reviewed your predictions for the results tomorrow.

30

Section  1/2 will review results.

Cloisters Trip form III.

MAY 1st

 

March 2009

2 Osmosis & Diffusion

Review Data of IKI

Be sure that you understand the concepts and the movement of the materials

3 4 Potato Lab

5 Potato Lab

Be sure that you understand the graph!

Be sure that you have read 5.12- 5.19

ESSAYS ARE UP!!!

6 O'Mara at DN A Learning Center in Harlem

Quiz on Osmosis and Diffusion 

You are allowed to use your notes! Notes and diagrams only!!!!

7?8

Homework over the weekend!

 You should read Chapter 6 completely and create a one page chart describing cellular respiration. Please click here for a guide.

Please fill as much as you can about each process BEFORE coming to class on Monday- 5 points!!!

You should have details about what the purpose of each section, what comes into each section, what feeds into the the next set. What is the final out come of ETC?

Where is carbon dioxide produced?

Where is the oxygen consumed?

 

REVIEW ESSAYS!

9 Energetics Cell Respiration

10 Energetics

More on Enegetics

We looked at the processes up close and in more detail

Be sure you can identify EXACTLY where water is used in the electron transport chain!

we reviewed a ppt slide presentation in class today that you should transfer to you notes tonight.

Please review ALL of the animations linked above tonight!!!!

11 Energetics

 

REVIEW LINKS!

Finish the worksheet for hw on cell respiration.

 

Online test up tonight LATE!!!!

 

12 Online test up 13 Essay test

14/15              SPRING BREAK!!!!

  17 18 19 20 21/22
23 24 25 26 27 28/29
30 31        

 

February 2009

Monday 2

Please work on the honors projects

Tuesday 3

Super Size Me!

Wed 4

Snow Day

Thursday 5

Starting Cell Structure and Function

Surface Area to volume ratio- why are all cells so smal?

prokaryotic cell structure- see links on the side and review ppt.

Read 4.1, 4.2

Friday 6

Cell Structure Con't

Period 7, room 128- Dr. baker is vistiing a class and you are welcome to attend! Possible free point!!!!

Sat/Sunday7/8

Monday 9

O'Mara out

BRING YOUR BIO TEXT BOOKS TO CLASS!

Tuesday 10

Section 1/2 - used microscpoes to look at cyanobacteria. Practiced mechanics of drawing

section 3/4- reviewed test and how the grading works, went over the packet- will grade and collect cell drawings with labels

section 5/6- above

Wednesday 11

More microscope- cheek cell

or slime depending on class

Thursday 12

 

Intergenerational Prom!!! Please sign up and come! Lots of fun!!

Friday 13

Honors Projects Due

Sat/Sunday 14/15

Valentine's Day

Monday 16

President's Break

Tuesday 17

President's Break

Wednesday 18

Endomembrane System Lecture

Middle School Swim Meet home 3:45 vs Newark Academy

Thursday 19

Endomembrane System on the board and application quiz

Take home homework from class on part of a cell

4.5- 4.13

Friday 20

Substitute for first period onlY!

read 4. 13- Mitochondria & Choloroplasts, Cytoskeleton

online quiz on  Part of cell Due tuesday. One submission only allowed. Link will live here.

Sat/ Sunday 21/22

Parts of cell online quiz

Monday 23

parts of a cell  online quiz

Energy and the Cell

Read 5.3- 5.5

Tuesday 24

Parts of a cell online quiz should be finished.

 

MS Meet at Ranney- I will be leaving early

Wednesday 25

Thursday 26

Winter Musical- Extra point available if you attend

Friday 27

Winter musical

Sat 28

Winter musical

Matinee

Monday Tuesday Wednesday

Thursday  1st

Friday 2

Sat & Sun

3 & 4

Welcome Back!

Please find your textbook and put your chemistry material away until next January!

Section your notebook according to dividers- first one Biochemistry!

Keep all Biochem material in this section.

6

Biology is chemistry that occurs in water!

Review the properties of water and what about the water molecule imparts the abilities to water.

Introduction to Biochemistry

Read 3.1, 3.2, 3.3, 3.4

Hydrocarbons, isomers, functional groups, polymer, monomer, dehydration synthesis, hydrolysis

Using molecular modeling kits in class.

 

7

Observation Polar versus Non Polar

8

Section 3/4 Observation

9 Lipids 10 & 11

12

Honors Letter Out to Students

Due on Friday

Introduction to Macromolecules Modeling Project

Review links on the side and get to know peptidoglycan!

13

14

Section 1/2 Modeling Project

peptidoglycan questions due

Away swim meet at Pennington

15

Section 3/4

Section 5/6 Modeling Project

Peptidoglycan questions due!

HW: Review all the links on the left for review help.

16

GUEST SPEAKER:

John Greenleaf, PhD. on arsenic in drinking water.

2:30-3:30 Faculty Lounge

All are encouraged to attend, especially Honors Candidates.

Quiz on Macromolecules (so far)

17 &18

19

Martin Luther King, jr Day

No Classes

20  PDB Project on Protein

Read 3.13 and 3.14  and digram on levels of proteins structure. Can you see the backbone interactions of secondary structure? What type of interactions make up tertiary structure? The diagram is very poor in tertirary structure- what could you add to improve the diagram?

 

21

Protein Structure Continues-

22

Swim Meet at Home MKA

23

Protein Page DUE.

24 & 25

26

quick review of the rules that govern the test this week.

HONORS CANDIDATES- you should have received an email from Mr. Hata today with the project. If you did not receive it please see me on Tuesday ASAP. Not receiving means that I don't have your honors letter.

27

Section 1/2- working on essays in class

Section 3/4 & 5/6- Nucleotides

Please read 10.2 page 184- 185 and 3.16 page 47

Test link is now live!!! Many requests were made to have the test made available a bit earlier than was scheduled. The deadline for two submissions is still Friday. Remember I will average your grade if you choose to submit twice. Also, remember to print out the test to work on it.

28

Essay Test see link above for essays. Remember I will choose two of the possible essays.

Online MC test link see above- is now live

IF THIS IS A SNOW DAY....we slide everything in class one day. The test will be Thursday.

Work on MC test see link above

29

Supersize Me!

Work on MC Test - see link above

30

Supersize Me!

Work on MC Test- see link above

Both submissions are due tonight!!!

31 & 1